seqnames	start	end	width	strand	enhName	pmid	pattern_any_stage_analysed	id	cell_type_annotation_Garvey_et_al	overlapping_domain	chromHMM
chr13	5413651	5414752	1102	*	abcg2c_(-478294),_meis1_(+26774)	30478328	no_heart_expression	25932	Not Assigned	not assigned	5_EnhA1
chr7	35567956	35569873	1918	*	aktip_(-499690),_irx5a_(-130129)	16024824	forebrain	91771	Not Assigned	not assigned	9_ReprPC
chr7	35559898	35561864	1967	*	aktip_(-507724),_irx5a_(-122095)	16024824	hindbrain,_spinal_cord	69617	Not Assigned	not assigned	5_EnhA1
chr6	58442464	58442975	512	*	cbfa2t2_(-741677),_arfrp1_(-78694)	18773071	cranial_oligodendrocytes	70975	Not Assigned	not assigned	10_Quies
chr16	839928	840522	595	*	celf3b_(-479622),_irx1a_(+57060)	30478328	pan-cardiac	39899	Not Assigned	not assigned	7_EnhWk1
chr20	28348462	28349877	1416	*	chac1_(-18632),_dll4_(+3096)	21435340	presumptive_olfactory_neurons	45054	Not Assigned	not assigned	8_Pois
chr14	24343249	24343948	700	*	cxcl14_(-230171),_slit3_(+120288)	25864959	spinal_cord_motor_neurons	64033	Not Assigned	not assigned	10_Quies
chr19	41877722	41879745	2024	*	dlx6a_(-1081)	19653328	forebrain,_midbrain	43737	Not Assigned	not assigned	8_Pois
chr16	42647613	42648302	690	*	dpy19l1l_(-121090),_tbx20_(-28164)	30478328	pan-cardiac	120103	Not Assigned	not assigned	10_Quies
chr19	46302645	46303247	603	*	eif3hb_(+2730),_eif3hb_(+122275)	30478328	outflow_tract_(OFT)-enriched	15680	Not Assigned	not assigned	10_Quies
chr13	28375210	28376243	1034	*	fgf8a_(+10758),_cyp17a1_(+104788)	21435340	tail_bud,_cranial_nerves,_aer	72930	Not Assigned	not assigned	8_Pois
chr13	28317885	28318547	663	*	fgf8a_(-46753),_slc2a15a_(+31369)	21435340	hindbrain,_spinal_cord,_AER,_notochord,_epihysis,_lens	25092	Not Assigned	not assigned	9_ReprPC
chr13	46399963	46400578	616	*	fgfr2_(-107717),_slc29a1a_(-37880)	25697895	forebrain,_hindbrain,_diencephalon,_central_nervous_system,_solid_lens_vesicle	29263	Not Assigned	not assigned	7_EnhWk1
chr5	14773952	14774646	695	*	gnb1l_(+8993),_tbx1_(+71095)	30478328	atrioventricular_(AVC)-enriched	67994	Not Assigned	not assigned	10_Quies
chr6	36571201	36572517	1317	*	her6_(+3091),_lrrc15_(+89856)	21435340	pharyngeal_arch_mesenchyme	79922	Not Assigned	not assigned	8_Pois
chr6	36571201	36572517	1317	*	her6_(+3091),_lrrc15_(+89856)	21435340	pharyngeal_arch_mesenchyme	124080	Not Assigned	not assigned	8_Pois
chr6	36571200	36572516	1317	*	her6_(+3092),_lrrc15_(+89855)	21435340	pharyngeal_arch_mesenchyme	79922	Not Assigned	not assigned	8_Pois
chr6	36571200	36572516	1317	*	her6_(+3092),_lrrc15_(+89855)	21435340	pharyngeal_arch_mesenchyme	124080	Not Assigned	not assigned	8_Pois
chr17	34493607	34494230	624	*	id2a_(-364055),_eif2s1a_(+197520)	30478328	outflow_tract_(OFT)-enriched	103119	Not Assigned	not assigned	6_EnhFlank
chr13	28263257	28263856	600	*	lbx1a_(-85869),_slc2a15a_(-23290)	21435340	forebrain,_hindbrain,_spinal_cord,_aer,_mhb,_anterior_myotome	51654	Not Assigned	not assigned	9_ReprPC
chr5	47772576	47773238	663	*	mef2cb_(-164273),_mblac2_(+240104)	30478328	pan-cardiac	110989	Not Assigned	not assigned	10_Quies
chr7	40365325	40365540	216	*	mnx1_(-1892)	15913596	spinal_motoneurons	122169	Not Assigned	not assigned	8_Pois
chr7	40402315	40402767	453	*	nom1_(-16099),_rnf32_(+65077)	29556077	paired_and_median_fins	87086	Not Assigned	not assigned	6_EnhFlank
chr7	40402770	40403511	742	*	nom1_(-16099),_rnf32_(+65077)	29556077	paired_and_median_fins	87086	Not Assigned	not assigned	6_EnhFlank
chr7	40402770	40403511	742	*	nom1_(-16099),_rnf32_(+65077)	29556077	paired_and_median_fins	108007	Not Assigned	not assigned	7_EnhWk1
chr17	38271272	38272213	942	*	pax9_(+24789),_slc25a21_(+189001)	22011226	sclerotome_and_myotome	114712	Not Assigned	not assigned	7_EnhWk1
chr13	10147064	10147896	833	*	prepl_(-341302),_six3a_(-18572)	25697895	forebrain,_midbrain_hindbrain_boundary,_anterior_neural_tube	16950	Not Assigned	not assigned	5_EnhA1
chr20	30030323	30031342	1020	*	rnf144ab_(-69182),_sox11b_(+101614)	19073165	olfactory_bulb,_telencephalon	44868	Not Assigned	not assigned	7_EnhWk1
chr24	1580317	1581091	775	*	zgc:85789_(-622674),_nrp1a_(-287400)	30478328	atrioventricular_(AVC)-enriched	97399	Not Assigned	not assigned	7_EnhWk1
chr7	12279432	12279656	225	*	CNE2.10_lmo1	19850031	anterior brain	105761	Not Assigned	not assigned	10_Quies
chr21	15875985	15876091	107	*	cns2_lhx5	26147098	diencephalic region	122222	Not Assigned	not assigned	9_ReprPC
chr21	15831236	15831369	134	*	csn9_lhx5	26147098	forebrain	122688	Not Assigned	not assigned	8_Pois
chr19	20281510	20282089	580	*	hoxa_12003	26131856	Hindbrain and more	96562	Not Assigned	not assigned	2_TssA2
chr11	18544252	18544841	590	*	id1A8_CRM2	18455719	notochord and adult telencephalon	72050	Not Assigned	not assigned	5_EnhA1
chr18	29716823	29717068	246	*	maf_11498	26131856	Hindbrain and more	20167	Not Assigned	not assigned	7_EnhWk1
chr2	29721821	29724805	2985	*	ptf1a_1	23876428	Nervous system and pancreas	122432	Not Assigned	not assigned	9_ReprPC
chr2	29723495	29724805	1311	*	ptf1a_2	23876428	Nervous system and pancreas	122432	Not Assigned	not assigned	9_ReprPC
chr23	38562754	38563247	494	*	tshz2_8749	26131856	Hindbrain and more	113724	Not Assigned	not assigned	7_EnhWk1
chr7	35583946	35584531	586	*	aktip_(-484366),_irx5a_(-145453)	19653328	midbrain	68692	CNS I	overlap	5_EnhA1
chr22	37183555	37184075	521	*	atp11b_(-253478),_sox2_(+64450)	25697895	immature_eye,_midbrain,_neural_tube,_spinal_cord,_forebrain,_hindbrain,_telencephalon,_cerebellum,_octic_vesicle	8150	CNS I	overlap	6_EnhFlank
chr22	37394170	37395036	867	*	atp11b_(-297663),_sox2_(+20265)	25697895	immature_eye,_midbrain,_neural_tube,_spinal_cord,_forebrain,_hindbrain,_telencephalon,_cerebellum,_octic_vesicle	14912	CNS I	overlap	5_EnhA1
chr22	37343526	37344159	634	*	atp11b_(-98711),_sox2_(+219217)	25697895	immature_eye,_midbrain,_neural_tube,_spinal_cord,_forebrain,_hindbrain,_telencephalon,_cerebellum,_octic_vesicle	8140	CNS I	overlap	5_EnhA1
chr17	36049561	36050098	538	*	colec11_(+522171),_cmpk2_(+644348)	19073165	cerebellum,hindbrain,_spinal_cord	31024	CNS I	overlap	5_EnhA1
chr22	37461756	37462493	738	*	dnajc19_(-137051),_sox2_(-47065)	25697895	immature_eye,_midbrain,_neural_tube,_spinal_cord,_forebrain,_hindbrain,_telencephalon,_cerebellum,_octic_vesicle	6190	CNS I	overlap	7_EnhWk1
chr7	54281958	54282726	769	*	fgf3_(-53645),_zgc:153993_(+76861)	25697895	forebrain,_midbrain,_midbrain_hindbrain_boundary,_somite,_diencephalon,_optic_stalk	3800	CNS I	overlap	5_EnhA1
chr13	46296307	46297078	772	*	fgfr2_(-3899)	25697895	forebrain,_hindbrain,_diencephalon,_central_nervous_system,_solid_lens_vesicle	48150	CNS I	overlap	5_EnhA1
chr14	32298892	32299728	837	*	inppl1b_(-109845),_atp11c_(-8611)	19073165	retina,_branchial_arches,_lateral_line_and_inner_ear	30752	CNS I	overlap	5_EnhA1
chr14	32313085	32313935	851	*	inppl1b_(-95645),_atp11c_(-22811)	19073165	retina,_branchial_arches,_lateral_line_and_inner_ear	15315	CNS I	overlap	5_EnhA1
chr20	30245456	30246440	985	*	sox11b_(-113501),_allc_(+222057)	19073165	hindbrain,_spinal_cord	10818	CNS I	overlap	5_EnhA1
chr14	26406981	26409627	2647	*	3.1ngn1	15496438	CNS	113036	CNS I	overlap	8_Pois
chr14	26406981	26409627	2647	*	3.1ngn1	15496438	CNS	124760	CNS I	overlap	8_Pois
chr9	53649282	53649684	403	*	CNE9.04_stka	19850031	midbrain	3437	CNS I	overlap	6_EnhFlank
chr14	26407929	26408282	354	*	LATE_ngn1	15496438	CNS	124760	CNS I	overlap	8_Pois
chr22	37187002	37187739	738	*	atp11b_(-249923),_sox2_(+68005)	25697895	immature_eye,_midbrain,_neural_tube,_spinal_cord,_forebrain,_hindbrain,_telencephalon,_cerebellum,_octic_vesicle	118931	CNS II	overlap	7_EnhWk1
chr13	28379762	28380107	346	*	fgf8a_(+14966),_cyp17a1_(+100580)	21435340	mhb,_ov,_fin,_retina,_aer	120768	CNS II	overlap	7_EnhWk1
chr2	29721821	29724805	2985	*	ptf1a_1	23876428	Nervous system and pancreas	79987	CNS II	overlap	8_Pois
chr2	29721821	29724805	2985	*	ptf1a_1	23876428	Nervous system and pancreas	123448	CNS II	overlap	8_Pois
chr2	29723495	29724805	1311	*	ptf1a_2	23876428	Nervous system and pancreas	123448	CNS II	overlap	8_Pois
chr19	21784298	21784502	205	*	tshz1_8799	26131856	Hindbrain and more	116235	CNS II	overlap	2_TssA2
chr2	3272774	3273602	829	*	ipp_(+27896),_wnt3a_(+44490)	25697895	neural_crest_cell,_midbrain,_cerebellum,_diencephalon	12254	CNS II, CNS I	overlap	5_EnhA1
chr14	26409407	26410006	600	*	ANPE_ngn1	15496438	CNS	104763	CNS II, CNS I	overlap	8_Pois
chr23	29176761	29177036	276	*	cst_9947	26131856	Hindbrain and more	19848	CNS II, CNS I	overlap	6_EnhFlank
chr14	26412988	26413201	214	*	LSE_ngn1	15496438	Telencephalon in embryo	74467	CNS II, CNS I	overlap	5_EnhA1
chr13	10178739	10179825	1087	*	prepl_(-309500),_six3a_(-50374)	25697895	forebrain,_midbrain_hindbrain_boundary,_anterior_neural_tube	39081	CNS II, Not Assigned, Optic vesicle	overlap	5_EnhA1
chr9	44491011	44492063	1053	*	cerkl_(-3643)	9409673	trigeminal_ganglion,_Rohon-Beard_sensory_neurons	123873	Differentiating neurons	overlap	8_Pois
chr17	29785260	29786053	794	*	ush2a_(-30981),_esrrga_(+99370)	24449846	epiphysis,_dorsal_diencephalon,_tegmentum,_hindbrain_neurons,_posterior_hindbrain/spinal_cord,_ventral_diencephalon	60427	Differentiating neurons	overlap	10_Quies
chr17	52908825	52909049	225	*	meis2a_1089	26131856	Hindbrain and more	96145	Differentiating neurons	overlap	10_Quies
chr15	35742539	35743132	594	*	mecom_(-194307),_irs1_(+329265)	30478328	outflow_tract_(OFT)-enriched	70670	Endothelium, Not Assigned	overlap	10_Quies
chr7	35274650	35275623	974	*	irx6a_(-30363),_irx5a_(+163649)	16024824	forebrain,_eye,_midbrain,_heart,_spinal_cord	109456	Epidermis, Differentiating neurons	overlap	10_Quies
chr2	29989388	29990307	920	*	eng2b_(-3038)	19898487	midbrain_hindbrain_boundary,_hindbrain	57378	Midbrain	overlap	8_Pois
chr13	28401000	28402021	1022	*	fgf8a_(+36542),_cyp17a1_(+79004)	21435340	mhb,_hindbrain,_tail_tip,_caudal_fin	96445	Midbrain	overlap	8_Pois
chr7	15789972	15790908	937	*	immp1l_(+8449),_btr04_(+152731)	19073165	hindbrain,_spinal_cord,_retina,_diencephalon,_pancreas	73959	Midbrain	overlap	7_EnhWk1
chr17	24275230	24276274	1045	*	otx1b_(-24600),_b3gnt2b_(+230035)	22011226	neural_plate	52358	Midbrain	overlap	7_EnhWk1
chr13	19196967	19197387	421	*	CNE2.05_emx2	19850031	midbrain	98460	Midbrain	overlap	8_Pois
chr17	24291897	24292523	627	*	otx1b_(-8142),_b3gnt2b_(+246493)	22011226	forebrain	21939	Midbrain, CNS I	overlap	8_Pois
chr20	30220716	30221476	761	*	sox11b_(-88649),_allc_(+246909)	19073165	tegmentum,hindbrain,_spinal_cord	38705	Midbrain, CNS I	overlap	5_EnhA1
chr5	47493748	47493954	207	*	tmem161b_(-74583),_mef2cb_(+114783)	29518216	Retina_(Ganglion_cells_layer,_Inner_nuclear_layer),_Telencephalon,_Optic_Tectum,_Hindbrain	53703	Midbrain, Optic vesicle	overlap	9_ReprPC
chr9	21521712	21522585	874	*	n6amt2_(-25959),_xpo4_(+26118)	26519295	Somitic_muscle,_Olfactory_epithelium	19711	Muscle III	overlap	7_EnhWk1
chr2	40120942	40121947	1006	*	slc25a36a_(-328025),_epha4a_(+48934)	26519295	Epidermis,_Otic_Vesicle,_Somitic_muscle	32566	Muscle III, Not Assigned	overlap	5_EnhA1
chr16	817451	819541	2091	*	irx2a_(-152847),_irx1a_(-97599)	19653328	midbrain,_hindbrain,_notochord	13991	Not Assigned, CNS I	overlap	6_EnhFlank
chr7	35754033	35757432	3400	*	calml4a_(-117958),_irx3a_(-14929)	16024824	forebrain,_midbrain,_hindbrain,_spinal_cord,_heart,_lateral_line_ganglion	56592	Not Assigned, CNS II	overlap	8_Pois
chr7	35754034	35757432	3399	*	calml4a_(-117959),_irx3a_(-14928)	19653328	hindbrain,_spinal_cord	56592	Not Assigned, CNS II	overlap	8_Pois
chr14	39973506	39974464	959	*	pcdh19_(+47716)	26519295	Epidermis,_Otic_vesicle,_Yolk	41357	Not Assigned, CNS II	overlap	2_TssA2
chr13	28443024	28444246	1223	*	cyp17a1_(+36880),_fgf8a_(+78666)	21435340	mhb,_cerebellum,_epiphysis,_aa,_ov,_olfactory_pits,_hypothal,_aer	29615	Not Assigned, Midbrain	overlap	7_EnhWk1
chr13	46331294	46331796	503	*	slc29a1a_(-106606),_fgfr2_(-38991)	25697895	forebrain,_hindbrain,_diencephalon,_central_nervous_system,_solid_lens_vesicle	1980	Not Assigned, Midbrain	overlap	6_EnhFlank
chr24	22849723	22850104	382	*	CNE3.06_arx	19850031	cns	43292	Not Assigned, Midbrain	overlap	7_EnhWk1
chr13	28375210	28376243	1034	*	fgf8a_(+10758),_cyp17a1_(+104788)	21435340	tail_bud,_cranial_nerves,_aer	73348	Not Assigned, Spinal cord	overlap	8_Pois
chr13	28408603	28409214	612	*	fgf8a_(+43940),_cyp17a1_(+71606)	21435340	retina,_lens,_rhomb,_spinal_cord,_aa,_aer	49224	Optic vesicle	overlap	5_EnhA1
chr25	15024153	15025636	1484	*	pax6a_(-76140),_wt1a_(+189245)	19073165	hindbrain,_optic_tectum,_anterior_spinal_cord,_retina,_diencephalon	65739	Optic vesicle	overlap	10_Quies
chr12	25404546	25405914	1369	*	six3b_(-104095),_ppm1bb_(+63963)	25697895	immature_eye,_diencephalon,_telencephalon,_forebrain,_optic_vesicle	19358	Optic vesicle	overlap	2_TssA2
chr11	19899235	19899920	686	*	CNE1.01_fezl	19850031	anterior brain	87973	Optic vesicle	overlap	8_Pois
chr17	50447048	50447858	811	*	bmp4_(-37548),_zgc:113377_(-36047)	30478328	pan-cardiac	12802	Pharyngeal mesoderm	overlap	5_EnhA1
chr1	37584245	37584873	629	*	hand2_(-108725),_fbxo8_(+52647)	30478328	ventricle-enriched	8107	Pharyngeal mesoderm	overlap	7_EnhWk1
chr17	34493607	34494230	624	*	id2a_(-364055),_eif2s1a_(+197520)	30478328	outflow_tract_(OFT)-enriched	39657	Pharyngeal mesoderm	overlap	6_EnhFlank
chr20	39690002	39690701	700	*	hey2_(+3351),_si:ch211-10j20.1_(+136389)	21435340	presumptive_olfactory_neurons	56719	Spinal cord	overlap	7_EnhWk1
chr3	23595196	23595862	667	*	hoxb2a_(-26073),_hoxb4a_(+4269)	16860306	hindbrain	120789	Spinal cord	overlap	8_Pois
chr3	23595336	23595665	330	*	hoxb2a_(-26101),_hoxb4a_(+4241)	20144609	hindbrain_r7_and_r8,_spinal_cord	120789	Spinal cord	overlap	8_Pois
chr23	36035767	36036026	260	*	hoxc1a_(-43404),_hoxc4a_(+3817)	20144609	hindbrain_r6,_r7_and_r8,_spinal_cord,_pectoral_fins,_pharyngeal_arches	74805	Spinal cord	overlap	8_Pois
chr23	36029636	36029917	282	*	hoxc4a_(-2303)	20144609	medial_hindbrain_r7_and_r8,_spinal_cord,_pectoral_fins	76450	Spinal cord	overlap	8_Pois
chr4	17413815	17414659	845	*	th2_(-12122),_pah_(+6320)	26519295	Spinal_cord	31484	Spinal cord	overlap	7_EnhWk1
chr5	23908389	23908957	569	*	znf703_(-78789),_tia1l_(+105295)	25697895	hindbrain,_midbrain,_neural_tube,_somite,_spinal_cord,_optic_cup,_vein	32714	Spinal cord	overlap	5_EnhA1
chr19	21797529	21797692	164	*	tshz1_8804	26131856	Hindbrain and more	107080	Spinal cord	overlap	5_EnhA1
chr3	53311577	53312999	1423	*	notch3_(-7779),_rdh8a_(+155087)	21435340	floor_plate,_hypochord,_notochord	66082	Spinal cord, CNS II	overlap	5_EnhA1
chr5	23903890	23905242	1353	*	znf703_(-74682),_tia1l_(+109402)	25697895	hindbrain,_midbrain,_neural_tube,_somite,_spinal_cord,_optic_cup,_vein	74353	Spinal cord, CNS II	overlap	5_EnhA1
chr14	26406981	26409627	2647	*	3.1ngn1	15496438	CNS	82056	Spinal cord, CNS II	overlap	8_Pois
chr18	24071414	24071633	220	*	nr2f2_8394	26131856	Hindbrain and more	12717	Spinal cord, CNS II, CNS I	overlap	5_EnhA1
chr23	36032678	36033254	577	*	hoxc4a_(+886)	20144609	lateral_and_ventral_hindbrain,_spinal_cord	69251	Spinal cord	overlap	8_Pois
chr14	24304207	24305174	968	*	cxcl14_(-191263),_slit3_(+159196)	25864959	spinal_cord_motor_neurons	21830	Spinal cord,  Differentiating neurons	overlap	1_TssA1
chr19	20190855	20191422	568	*	hoxa4a_(-3477)	20144609	medioventral_hindbrain,_pectoral_fins,_vagal_ganglia,_spinal_cord	112264	Spinal cord, Tailbud	overlap	8_Pois
chr19	20190880	20191378	499	*	hoxa4a_(-3487)	21435340	hindbrain,_spinal_cord	112264	Spinal cord, Tailbud	overlap	8_Pois
chr17	32896484	32897294	811	*	smyd2a_(-69844),_prox1a_(+16388)	30478328	pan-cardiac	59798	CNS II, Not Assigned	no overlap	2_TssA2
chr7	35723444	35724598	1155	*	calml4a_(-85884),_irx3a_(-47003)	16024824	midbrain,_hindbrain,_spinal_cord	106355	Epidermis	no overlap	9_ReprPC
chr9	11410273	11411269	997	*	cdk5r2b_(-150051),_wnt10a_(+2115)	26519295	Tail_bud,_eye,_heart	116460	Epidermis	no overlap	3_TssFlank1
chr1	90391	90590	200	*	ildr1a_(-40244),_appa_(-17435)	30551672	arches,_hindbrain_and_heart	120403	Epidermis/periderm, Epidermis/olfactory/pronephric	no overlap	5_EnhA1
chr13	28321123	28321620	498	*	fgf8a_(-43597),_slc2a15a_(+34525)	21435340	retina,_epiphysis	92514	Muscle II, 	no overlap	8_Pois
chr19	22644845	22645406	562	*	nfatc1_(+12671),_zgc:109744_(+117154)	26519295	Notochord	107679	Muscle III	no overlap	10_Quies
chr1	4595716	4595850	135	*	tuba8l2_(-82463),_spry2_(+38248)	29518216	notochord	4772	Muscle III, Not Assigned	no overlap	5_EnhA1
chr20	39717315	39717860	546	*	hddc2_(-65349),_hey2_(-23885)	30478328	ventricle-enriched	17975	Not Assigned, Blood	no overlap	5_EnhA1
chr5	47752764	47753678	915	*	mef2cb_(-144587),_mblac2_(+259790)	30478328	ventricle-enriched	8162	Not Assigned, Blood	no overlap	7_EnhWk1
chr9	2869354	2869566	213	*	CNE3.16_dlx1a_2a	19850031	anterior brain	26269	Not Assigned, Blood	no overlap	2_TssA2
chr3	23610584	23612430	1847	*	hoxb2a_(-10095),_hoxb4a_(+20247)	16860306	hindbrain	116284	Tailbud	no overlap	8_Pois
chr9	1954872	1955145	274	*	hoxd4a_(-4662)	20144609	motor_neurons,pharyngeal_arches,_pectoral_fins	104032	Tailbud	no overlap	8_Pois
chr9	1958715	1959021	307	*	hoxd4a_(-8521),_hoxd9a_(+6062)	20144609	hindbrain_r4_to_r6,_pharyngeal_arches,_pectoral_fins	105702	Tailbud	no overlap	8_Pois
chr9	1958776	1958999	224	*	hoxd4a_(-8541),_hoxd9a_(+6042)	21435340	hindbrain_(r4-r6)	105702	Tailbud	no overlap	8_Pois
chr13	46301201	46301904	704	*	slc29a1a_(-136838),_fgfr2_(-8759)	25697895	forebrain,_hindbrain,_diencephalon,_central_nervous_system,_solid_lens_vesicle	36109	Tailbud	no overlap	7_EnhWk1
chr16	21120059	21120292	234	*	CNE4.02_hoxa2b	19850031	snc	83246	Tailbud	no overlap	8_Pois
chr3	23610584	23612430	1847	*	hoxb2a_(-10095),_hoxb4a_(+20247)	16860306	hindbrain	55370	Tailbud,	no overlap	8_Pois
chr19	22618208	22618833	626	*	nfatc1_(-13934),_atp9b_(+128376)	30478328	inconsistent_between_different_alleles	1799	Tailbud,	no overlap	5_EnhA1
chr2	30004978	30005884	907	*	cnpy1_(+7072),_eng2b_(+12545)	30478328	ventricle-enriched	23160	CNS II, CNS I	no overlap	5_EnhA1
chr8	16326006	16327821	1816	*	dmrta2_(-103563),_faf1_(+43814)	19653328	forebrain,_limb	54326	Midbrain	partial	8_Pois
chr8	16326006	16327821	1816	*	dmrta2_(-103563),_faf1_(+43814)	19653328	forebrain,_limb	94553	Midbrain	partial	5_EnhA1
chr17	21387288	21387597	310	*	CNE1.20_vax1	19850031	eye, notochord	41915	Midbrain	partial	5_EnhA1
chr11	19893333	19893603	271	*	CNE2.01.1_fezl	19850031	anterior brain	120666	Midbrain	partial	8_Pois
chr13	19197623	19198217	595	*	CNE2.04_emx2	19850031	anterior brain, hatching gland	71143	Midbrain	partial	8_Pois
chr13	28271353	28272162	810	*	lbx1a_(-94070),_slc2a15a_(-15089)	21435340	pec_fin,_otic_vesical,_notochord,_mhb	79769	Neural crest, Differentiating neurons	partial	9_ReprPC
chr5	23866340	23867696	1357	*	znf703_(-37134),_tia1l_(+146950)	25697895	hindbrain,_midbrain,_neural_tube,_somite,_spinal_cord,_optic_cup,_vein	45825	Not Assigned, Tailbud	partial	2_TssA2
chr19	20190580	20190708	129	*	hoxa4a_(-3972)	21435340	hindbrain_(r7/r8),_spinal_cord	92361	Tailbud	partial	8_Pois
chr19	20190484	20190763	280	*	hoxa4a_(-3992)	20144609	dorsal_hindbrain,_spinal_cord	92361	Tailbud	partial	8_Pois
chr9	1947194	1948182	989	*	hoxd3a_(-9395),_hoxd4a_(+2659)	20144609	hindbrain,_spinal_cord,_pharyngeal_arches	91272	Tailbud	partial	8_Pois
chr9	1947195	1948182	988	*	hoxd3a_(-9396),_hoxd4a_(+2658)	21435340	hindbrain,_spinal_cord,_pharyngeal_arches	91272	Tailbud	partial	8_Pois
chr9	1949306	1949575	270	*	hoxd4a_(+906)	20144609	hindbrain_r8,_spinal_cord,_myotome,_pharyngeal_arches_,_pectoral_fins	72464	Tailbud	partial	8_Pois
chr9	1949351	1949429	79	*	hoxd4a_(+957)	21435340	hindbrain_(r8),_spinal_cord,_pharyngeal_arches,_pec_fins	72464	Tailbud	partial	8_Pois
chr9	1962671	1962919	249	*	hoxd4a_(-12448),_hoxd9a_(+2135)	21435340	posterior_spinal_cord,_somite,_pec_fin	104087	Tailbud	partial	8_Pois
chr9	1962632	1963056	425	*	hoxd4a_(-12497),_hoxd9a_(+2086)	20144609	posterior_spinal_cord,_pharyngeal_arches,_pectoral_fins	104087	Tailbud	partial	8_Pois
chr9	1954911	1955109	199	*	hoxd4a_(-4663)	21435340	spinal_cord,_motor_neurons	104032	Tailbud	partial	8_Pois
chr3	23591582	23591897	316	*	hoxb4a_(+480)	20144609	spinal_cord	96576	Tailbud,	partial	8_Pois
chr3	23591712	23591900	189	*	hoxb4a_(+546)	21435340	spinal_cord	96576	Tailbud,	partial	8_Pois
chr3	23583929	23584195	267	*	hoxb4a_(-7198),_hoxb5a_(+6919)	20144609	hindbrain_r7_and_r8,_pectoral_fins,_pharyngeal_arches,_spinal_cord,_somite,_notochord	41882	Tailbud,	partial	8_Pois
chr3	23583952	23584050	99	*	hoxb4a_(-7259),_hoxb5a_(+6858)	21435340	hindbrain_(r7/r8),_spinal_cord,_pec_fins,_pharyngeal_arches,_somite,_notochord	41882	Tailbud,	partial	8_Pois
chr6	24485010	24486000	991	*	znf644b_(-76422),_tgfbr3_(+186407)	26519295	Spinal_cord	38837	Tailbud,	partial	5_EnhA1
chr24	11558136	11558398	263	*	CNE2.18_gli3	19850031	telencephalonb	38559	Midbrain	partial	7_EnhWk1
chr21	15865451	15865916	466	*	cns4_lhx5	26147098	hypothalamus	29538	Midbrain	partial	9_ReprPC
chr24	4803504	4803890	387	*	Zic1_5744	26131856	Hindbrain and more	51379	Midbrain	partial	8_Pois
chr18	17395716	17397160	1445	*	zfpm1_(+13798),_trhr2_(+229608)	30478328	ventricle-enriched	47207	Blood	undetermined	7_EnhWk1
chr20	25441568	25441633	66	*	ctgf_up1	18455719	NA	63324	Muscle III	undetermined	2_TssA2